Research Output

2020

Robust algorithm for estimating total suspended solids (TSS) in inland and nearshore coastal waters

Balasubramanian, S. V., Pahlevan, N., Smith, B., Binding, C., Schalles, J., Loisel, H., Gurlin, D., Greb, S., Alikas, K., Randla, M., Bunkei, M., Moses, W., Nguyễn, H., Lehmann, M. K., O'Donnell, D., Ondrusek, M., Han, T. H., Fichot, C. G., Moore, T. & Boss, E., Sep 1 2020, In : Remote Sensing of Environment. 246, 111768.

Research output: Contribution to journalArticle

Open Access

Seamless retrievals of chlorophyll-a from Sentinel-2 (MSI) and Sentinel-3 (OLCI) in inland and coastal waters: A machine-learning approach

Pahlevan, N., Smith, B., Schalles, J., Binding, C., Cao, Z., Ma, R., Alikas, K., Kangro, K., Gurlin, D., Hà, N., Matsushita, B., Moses, W., Greb, S., Lehmann, M. K., Ondrusek, M., Oppelt, N. & Stumpf, R., Apr 2020, In : Remote Sensing of Environment. 240, 111604.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2018

A Forward Genetic Screen Targeting the Endothelium Reveals a Regulatory Role for the Lipid Kinase Pi4ka in Myelo- and Erythropoiesis

Ziyad, S., Riordan, J. D., Cavanaugh, A. M., Su, T., Hernandez, G. E., Hilfenhaus, G., Morselli, M., Huynh, K., Wang, K., Chen, J. N., Dupuy, A. J. & Iruela-Arispe, M. L., Jan 30 2018, In : Cell Reports. 22, 5, p. 1211-1224 14 p.

Research output: Contribution to journalArticle

3 Scopus citations

Evaluating ultraviolet (UV) based photochemistry in optically complex coastal waters using the Hyperspectral Imager for the Coastal Ocean (HICO)

Cao, F., Mishra, D. R., Schalles, J. & Miller, W. L., Dec 31 2018, In : Estuarine, Coastal and Shelf Science. 215, p. 199-206 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

High costs of infection: Alphavirus infection reduces digestive function and bone and feather growth in nestling house sparrows (Passer domesticus)

Fassbinder-Orth, C. A., Killpack, T. L., Goto, D. S., Rainwater, E. L. & Shearn-Bochsler, V. I., Apr 2018, In : PloS one. 13, 4, e0195467.

Research output: Contribution to journalArticle

2 Scopus citations

Optical types of inland and coastal waters

Spyrakos, E., O'Donnell, R., Hunter, P. D., Miller, C., Scott, M., Simis, S. G. H., Neil, C., Barbosa, C. C. F., Binding, C. E., Bradt, S., Bresciani, M., Dall'Olmo, G., Giardino, C., Gitelson, A. A., Kutser, T., Li, L., Matsushita, B., Martinez-Vicente, V., Matthews, M. W., Ogashawara, I. & 5 others, Ruiz-Verdú, A., Schalles, J. F., Tebbs, E., Zhang, Y. & Tyler, A. N., Mar 2018, In : Limnology and Oceanography. 63, 2, p. 846-870 25 p.

Research output: Contribution to journalArticle

52 Scopus citations

The Fat-Dachsous signaling pathway regulates growth of horns in Trypoxylus dichotomus, but does not affect horn allometry

Hust, J., Lavine, M. D., Worthington, A., Zinna, R., Gotoh, H., Niimi, T. & Lavine, L., Feb 1 2018, In : Journal of Insect Physiology. 105, p. 85-94 10 p.

Research output: Contribution to journalArticle

5 Scopus citations
2017

A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-κB to modulate inflammatory gene transcription in mouse macrophages

Ma, S., Ming, Z., Gong, A. Y., Wang, Y., Chen, X., Hu, G., Zhou, R., Shibata, A., Swanson, P. C. & Chen, X. M., Mar 2017, In : FASEB Journal. 31, 3, p. 1215-1225 11 p.

Research output: Contribution to journalArticle

29 Scopus citations

Cellulose acetate phthalate and antiretroviral nanoparticle fabrications for HIV pre-exposure prophylaxis

Mandal, S., Khandalavala, K., Pham, R., Bruck, P., Varghese, M., Kochvar, A., Monaco, A., Prathipati, P. K., Destache, C. & Shibata, A., Sep 7 2017, In : Polymers. 9, 9, 423.

Research output: Contribution to journalArticle

7 Scopus citations
2016
22 Scopus citations

Immunoglobulin detection in wild birds: effectiveness of three secondary anti-avian IgY antibodies in direct ELISAs in 41 avian species

Fassbinder-Orth, C. A., Wilcoxen, T. E., Tran, T., Boughton, R. K., Fair, J. M., Hofmeister, E. K., Grindstaff, J. L. & Owen, J. C., Oct 1 2016, In : Methods in Ecology and Evolution. 7, 10, p. 1174-1181 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

LincRNA-Cox2 promotes late inflammatory gene transcription in macrophages through modulating SWI/SNF-mediated chromatin remodeling

Hu, G., Gong, A. Y., Wang, Y., Ma, S., Chen, X., Chen, J., Su, C. J., Shibata, A., Strauss-Soukup, J. K., Drescher, K. M. & Chen, X. M., Mar 15 2016, In : Journal of Immunology. 196, 6, p. 2799-2808 10 p.

Research output: Contribution to journalArticle

85 Scopus citations

Susceptibility and antibody response of vesper sparrows (Pooecetes gramineus) to west nile virus: A potential amplification host in sagebrush-grassland habitat

Hofmeister, E. K., Dusek, R. J., Fassbinder-Orth, C., Owen, B. & Christian Franson, J., Apr 2016, In : Journal of Wildlife Diseases. 52, 2, p. 345-353 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Topical tenofovir disoproxil fumarate nanoparticles prevent HIV-1 vaginal transmission in a humanized mouse model

Destache, C. J., Mandal, S., Yuan, Z., Kang, G., Date, A. A., Lu, W., Shibata, A., Pham, R., Bruck, P., Rezich, M., Zhou, Y., Vivekanandan, R., Fletcher, C. V. & Li, Q., Jun 2016, In : Antimicrobial agents and chemotherapy. 60, 6, p. 3633-3639 7 p.

Research output: Contribution to journalArticle

19 Scopus citations
2015
11 Scopus citations

Correction to: Nanoformulations of Rilpivirine for Topical Pericoital and Systemic Coitus-Independent Administration Efficiently Prevent HIV Transmission (PLoS Pathog, (2015) 11, [10])

Kovarova, M., Council, O. D., Date, A. A., Long, J. M., Nochi, T., Belshan, M., Shibata, A., Vincent, H., Baker, C. E., Thayer, W. O., Kraus, G., Lachaud-Durand, S., Williams, P., Destache, C. J. & Garcia, J. V., Oct 16 2015, In : PLoS pathogens. 11, 10, e1005170.

Research output: Contribution to journalComment/debate

8 Scopus citations
6 Scopus citations

Eosinophil-associated ribonuclease 11 is a macrophage chemoattractant

Yamada, K. J., Barker, T., Dyer, K. D., Rice, T. A., Percopo, C. M., Garcia-Crespo, K. E., Cho, S., Lee, J. J., Druey, K. M. & Rosenberg, H. F., Apr 3 2015, In : Journal of Biological Chemistry. 290, 14, p. 8863-8875 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Nanoformulations of Rilpivirine for Topical Pericoital and Systemic Coitus-Independent Administration Efficiently Prevent HIV Transmission

Kovarova, M., Council, O. D., Date, A. A., Long, J. M., Nochii, T., Belshan, M., Shibata, A., Vincent, H., Baker, C. E., Thayer, W. O., Kraus, G., Lachaud-Durand, S., Williams, P., Destache, C. J. & Garcia, J. V., Aug 1 2015, In : PLoS pathogens. 11, 8, e1005075.

Research output: Contribution to journalArticle

43 Scopus citations

Thermosensitive gel containing cellulose acetate phthalate-efavirenz combination nanoparticles for prevention of HIV-1 infection

Date, A. A., Shibata, A., McMullen, E., La Bruzzo, K., Bruck, P., Belshan, M., Zhou, Y. & Destache, C. J., Mar 1 2015, In : Journal of Biomedical Nanotechnology. 11, 3, p. 416-427 12 p.

Research output: Contribution to journalArticle

23 Scopus citations

Two developmentally distinct populations of neural crest cells contribute to the zebrafish heart

Cavanaugh, A. M., Huang, J. & Chen, J. N., Aug 15 2015, In : Developmental Biology. 404, 2, p. 103-112 10 p.

Research output: Contribution to journalArticle

33 Scopus citations
2014

Buggy creek virus (Togaviridae: Alphavirus) upregulates expression of pattern recognition receptors and interferons in house sparrows (Passer domesticus)

Fassbinder-Orth, C. A., Barak, V. A., Rainwater, E. L. & Altrichter, A. M., Jun 1 2014, In : Vector-Borne and Zoonotic Diseases. 14, 6, p. 439-446 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Evaluating indices of body condition in two cricket species

Kelly, C. D., Tawes, B. R. & Worthington, A. M., Dec 1 2014, In : Ecology and Evolution. 4, 23, p. 4476-4487 12 p.

Research output: Contribution to journalArticle

21 Scopus citations

Evolutionary and functional novelty of pancreatic ribonuclease: A study of musteloidea (order Carnivora)

Liu, J., Wang, X. P., Cho, S., Lim, B. K., Irwin, D. M., Ryder, O. A., Zhang, Y. P. & Yu, L., May 27 2014, In : Scientific Reports. 4, 5070.

Research output: Contribution to journalArticle

13 Scopus citations

Methods for quantifying gene expression in ecoimmunology: From qPCR to RNA-Seq

Fassbinder-Orth, C. A., Sep 2014, In : Integrative and Comparative Biology. 54, 3, p. 396-406 11 p.

Research output: Contribution to journalArticle

24 Scopus citations
2013
12 Scopus citations

Landscape estimates of habitat types, plant biomass, and invertebrate densities in a Georgia salt marsh

Schalles, J. F., Hladik, C. M., Lynes, A. A. & Pennings, S. C., Sep 1 2013, In : Oceanography. 26, 3, p. 88-97 10 p.

Research output: Contribution to journalArticle

22 Scopus citations

MT2-MMP Expression During Early Avian Morphogenesis

Patterson, R. A., Cavanaugh, A. M., Cantemir, V., Brauer, P. R. & Reedy, M. V., Jan 2013, In : Anatomical Record. 296, 1, p. 64-70 7 p.

Research output: Contribution to journalArticle

9 Scopus citations

Novel aquatic silk genes from Simulium (Psilozia) vittatum (Zett) Diptera: Simuliidae

Papanicolaou, A., Woo, A., Brei, B., Ma, D., Masedunskas, A., Gray, E., Xiao, G. G., Cho, S. & Brockhouse, C., Dec 2013, In : Insect Biochemistry and Molecular Biology. 43, 12, p. 1181-1188 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Ontogenetic changes in innate immune function in captive and wild subspecies of prairie-chickens (Tympanuchus cupido spp.)

Meier, S. A., Fassbinder-Orth, C. A. & Karasov, W. H., Apr 1 2013, In : Journal of Wildlife Management. 77, 3, p. 633-638 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

Polymeric nanoparticles containing combination antiretroviral drugs for HIV type 1 treatment

Shibata, A., McMullen, E., Pham, A., Belshan, M., Sanford, B., Zhou, Y., Goede, M., Date, A. A. & Destache, C. J., 2013, In : AIDS Research and Human Retroviruses. 29, 5, p. 746-754 9 p.

Research output: Contribution to journalArticle

46 Scopus citations

Salt marsh elevation and habitat mapping using hyperspectral and LIDAR data

Hladik, C., Schalles, J. & Alber, M., Dec 1 2013, In : Remote Sensing of Environment. 139, p. 318-330 13 p.

Research output: Contribution to journalArticle

78 Scopus citations
22 Scopus citations
2012

Development and evaluation of a thermosensitive vaginal gel containing raltegravir+efavirenz loaded nanoparticles for HIV prophylaxis

Date, A. A., Shibata, A., Goede, M., Sanford, B., La Bruzzo, K., Belshan, M. & Destache, C. J., Dec 1 2012, In : Antiviral Research. 96, 3, p. 430-436 7 p.

Research output: Contribution to journalArticle

57 Scopus citations

Mapping phytoplankton chlorophyll in turbid, Case 2 estuarine and coastal waters

Schalles, J. F. & Hladik, C. M., Dec 1 2012, In : Israel Journal of Plant Sciences. 60, 1-2, p. 169-191 23 p.

Research output: Contribution to journalArticle

2 Scopus citations
18 Scopus citations
2011

Evidence for positive selection on the leptin gene in cetacea and pinnipedia

Yu, L., Jin, W., Zhang, X., Wang, D., Zheng, J. S., Yang, G., Xu, S. X., Cho, S. & Zhang, Y. P., 2011, In : PloS one. 6, 10, e26579.

Research output: Contribution to journalArticle

11 Scopus citations

The PAF1 complex differentially regulates cardiomyocyte specification

Langenbacher, A. D., Nguyen, C. T., Cavanaugh, A. M., Huang, J., Lu, F. & Chen, J. N., May 1 2011, In : Developmental Biology. 353, 1, p. 19-28 10 p.

Research output: Contribution to journalArticle

26 Scopus citations
2010

Antiretroviral release from poly(DL-lactide-co-glycolide) nanoparticles in mice

Destache, C. J., Belgum, T., Goede, M., Shibata, A. & Belshan, M. A., Aug 21 2010, In : Journal of Antimicrobial Chemotherapy. 65, 10, p. 2183-2187 5 p., dkq318.

Research output: Contribution to journalArticle

57 Scopus citations

Application of hyperspectral remotely sensed data for water quality monitoring: Accuracy and limitation

Bhattf, A. M., Rundquist, D., Schalles, J. & Ramirez, L., 2010, Accuracy 2010 - Proceedings of the 9th International Symposium on Spatial Accuracy Assessment in Natural Resources and Environmental Sciences. International Spatial Accuracy Research Association (ISARA), p. 349-352 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Qualitative assessment of inland and coastal waters by using remotely sensed data

Bhatti, A. M., Rundquist, D., Schalles, J., Steele, M. & Takagi, M., Jan 1 2010, In : International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences - ISPRS Archives. 38, p. 415-420 6 p.

Research output: Contribution to journalConference article

4 Scopus citations
2009

A comparison between above-water surface and subsurface spectral reflectances collected over inland waters

Bhatti, A. M., Rundquist, D., Schalles, J., Ramirez, L. & Nasu, S., Jul 17 2009, In : Geocarto International. 24, 2, p. 133-141 9 p.

Research output: Contribution to journalArticle

18 Scopus citations

Combination antiretroviral drugs in PLGA nanoparticle for HIV-1

Destache, C. J., Belgum, T., Christensen, K., Shibata, A., Sharma, A. & Dash, A., Dec 9 2009, In : BMC Infectious Diseases. 9, 198.

Research output: Contribution to journalArticle

80 Scopus citations

Mutations in two independent pathways are sufficient to create hermaphroditic nematodes

Baldi, C., Cho, S. & Ellis, R. E., Nov 13 2009, In : Science. 326, 5955, p. 1002-1005 4 p.

Research output: Contribution to journalArticle

54 Scopus citations

Oral and parenteral immunization of chickens (Gallus gallus) against West Nile virus with recombinant envelope protein

Fassbinder-Orth, C. A., Hofmeister, E. K., Weeks-Levy, C. & Karasov, W. H., Dec 1 2009, In : Avian Diseases. 53, 4, p. 502-509 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos

O'Brien, G. S., Rieger, S., Martin, S. M., Cavanaugh, A. M., Portera-Cailliau, C. & Sagasti, A., Feb 2009, In : Journal of Visualized Experiments. 24, e1129.

Research output: Contribution to journalArticle

43 Scopus citations
2008

Homocysteine enhances cardiac neural crest cell attachment in vitro by increasing intracellular calcium levels

Heidenreich, D. J., Reedy, M. V. & Brauer, P. R., Aug 1 2008, In : Developmental Dynamics. 237, 8, p. 2117-2128 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Retrieving quantum yield of sun-induced chlorophyll fluorescence near surface from hyperspectral in-situ measurement in productive water

Zhou, J., Gilerson, A., Ioannau, I., Hlaing, S., Schalles, J., Gross, B., Moshary, F. & Ahmed, S., Oct 27 2008, In : Optics Express. 16, 22, p. 17468-17483 16 p.

Research output: Contribution to journalArticle

11 Scopus citations
2007

Detecting and mapping chlorophyll-a and total suspended solids in Apalachicola Bay, Florida

Wang, H., Hladik, C. M., Huang, W., Milla, K., Edmiston, L., Harwell, M. A. & Schalles, J. F., Dec 1 2007, 9th International Symposium on Fluid Control Measurement and Visualization 2007, FLUCOME 2007. p. 1459-1468 10 p. (9th International Symposium on Fluid Control Measurement and Visualization 2007, FLUCOME 2007; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution