Department of Medical Microbiology and Immunology

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2020

A standard numbering scheme for class C β-lactamases

Mack, A. R., Barnes, M. D., Taracila, M. A., Hujer, A. M., Hujer, K. M., Cabot, G., Feldgarden, M., Haft, D. H., Klimke, W., Van Den Akker, F., Vila, A. J., Smania, A., Haider, S., Papp-Wallace, K. M., Bradford, P. A., Rossolini, G. M., Docquier, J. D., Frère, J. M., Galleni, M., Hanson, N. D. & 8 others, Oliver, A., Plésiat, P., Poirel, L., Nordmann, P., Palzkill, T. G., Jacoby, G. A., Bush, K. & Bonomo, R. A., Jan 1 2020, In : Antimicrobial agents and chemotherapy. 64, 3, e01841-19.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Establishment of an in vitro RNA polymerase transcription system: a new tool to study transcriptional activation in Borrelia burgdorferi

Boyle, W. K., Hall, L. S., Armstrong, A. A., Dulebohn, D. P., Samuels, D. S., Gherardini, F. C. & Bourret, T. J., Dec 1 2020, In : Scientific Reports. 10, 1, 8246.

Research output: Contribution to journalArticle

Open Access

Molecular Detection of Spotted Fever Group Rickettsiae (Rickettsiales: Rickettsiaceae) in Dermacentor variabilis (Acari: Ixodidae) Collected Along the Platte River in South Central Nebraska

Luedtke, B. E., Shaffer, J. J., Monrroy, E., Willicott, C. W. & Bourret, T. J., Feb 27 2020, In : Journal of medical entomology. 57, 2, p. 519-523 5 p.

Research output: Contribution to journalArticle

Open Access
2019

Alteration of prion strain emergence by nonhost factors

Holec, S. A. M., Yuan, Q. & Bartz, J. C., Jan 1 2019, In : mSphere. 4, 5, e00630-19.

Research output: Contribution to journalArticle

Open Access

A potential long-acting bictegravir loaded nano-drug delivery system for HIV-1 infection: A proof-of-concept study

Mandal, S., Prathipati, P. K., Belshan, M. & Destache, C. J., Jul 2019, In : Antiviral Research. 167, p. 83-88 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Assessing the Contribution of an HtrA Family Serine Protease During Borrelia turicatae Mammalian Infection

Jackson-Litteken, C. D., Zalud, A. K., Ratliff, C. T., Latham, J. I., Bourret, T. J., Lopez, J. E. & Blevins, J. S., Aug 13 2019, In : Frontiers in cellular and infection microbiology. 9, 290.

Research output: Contribution to journalArticle

Open Access

CD4+ T cell activation and associated susceptibility to HIV-1 infection in vitro increased following acute resistance exercise in human subjects

Holbrook, A. K., Peterson, H. D., Bianchi, S. A., Macdonald, B. W., Bredahl, E. C., Belshan, M. & Siedlik, J. A., Sep 1 2019, In : Physiological Reports. 7, 18, e14234.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
6 Scopus citations

Comparison of the microbiological efficacy of tedizolid and linezolid in acute bacterial skin and skin structure infections: pooled data from phase 3 clinical trials

Corey, R., Moran, G., Goering, R., Bensaci, M., Sandison, T., De Anda, C. & Prokocimer, P., Jul 2019, In : Diagnostic Microbiology and Infectious Disease. 94, 3, p. 277-286 10 p.

Research output: Contribution to journalArticle

DCAF1 (VprBP): emerging physiological roles for a unique dual-service E3 ubiquitin ligase substrate receptor

Schabla, N. M., Mondal, K. & Swanson, P. C., Sep 19 2019, In : Journal of molecular cell biology. 11, 9, p. 725-735 11 p.

Research output: Contribution to journalArticle

Open Access

DksA Controls the Response of the Lyme Disease Spirochete Borrelia burgdorferi to Starvation

Boyle, W. K., Groshong, A. M., Drecktrah, D., Boylan, J. A., Gherardini, F. C., Blevins, J. S., Samuels, D. S. & Bourret, T. J., Feb 15 2019, In : Journal of Bacteriology. 201, 4

Research output: Contribution to journalArticle

5 Scopus citations

Draft genome assemblies of clinical isolates of klebsiella pneumoniae V9011662 and enterobacter hormaechei Entb306

Harrison, L. B., Selmecki, A. & Hanson, N. D., 2019, In : Microbiology Resource Announcements. 8, 15, e00091-19.

Research output: Contribution to journalArticle

Open Access

Emergence of oxacillin resistance in stealth methicillin-resistant staphylococcus aureus due to mecA sequence instability

Goering, R. V., Swartzendruber, E. A., Obradovich, A. E., Tickler, I. A. & Tenover, F. C., Jan 1 2019, In : Antimicrobial agents and chemotherapy. 63, 8, e00558-19.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Engineering a murine cell line for the stable propagation of hamster prions

Bourkas, M. E. C., Arshad, H., Al-Azzawi, Z. A. M., Halgas, O., Shikiya, R. A., Mehrabian, M., Schmitt-Ulms, G., Bartz, J. C. & Watts, J. C., Mar 29 2019, In : Journal of Biological Chemistry. 294, 13, p. 4911-4923 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Evolution and global transmission of a multidrug-resistant, community-associated methicillin-resistant staphylococcus aureus lineage from the Indian subcontinent

Steinig, E. J., Duchene, S., Robinson, D. A., Monecke, S., Yokoyama, M., Laabei, M., Slickers, P., Andersson, P., Williamson, D., Kearns, A., Goering, R. V., Dickson, E., Ehricht, R., Ip, M., O’sullivan, M. V. N., Coombs, G. W., Petersen, A., Brennan, G., Shore, A. C., Coleman, D. C. & 18 others, Pantosti, A., Lencastre, H. D., Westh, H., Kobayashi, N., Heffernan, H., Strommenger, B., Layer, F., Weber, S., Aamot, H. V., Skakni, L., Peacock, S. J., Sarovich, D., Harris, S., Parkhill, J., Massey, R. C., Holden, M. T. G., Bentley, S. D. & Tong, S. Y. C., Nov 1 2019, In : mBio. 10, 6, e01105-19.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Functional divergence of a global regulatory complex governing fungal filamentation

Polvi, E. J., Veri, A. O., Liu, Z., Hossain, S., Hyde, S., Kim, S. H., Tebbji, F., Sellam, A., Todd, R. T., Xie, J. L., Lin, Z. Y., Wong, C. J., Shapiro, R. S., Whiteway, M., Robbins, N., Gingras, A. C., Selmecki, A. & Cowen, L. E., Jan 1 2019, In : PLoS Genetics. 15, 1, p. e1007901

Research output: Contribution to journalArticle

3 Scopus citations

Indole-2-carboxamides are active against mycobacterium abscessus in a mouse model of acute infection

Pandya, A. N., Prathipati, P. K., Hegde, P., Li, W., Graham, K. F., Mandal, S., Drescher, K. M., Destache, C. J., Ordway, D., Jackson, M. & Northa, E. J., Mar 1 2019, In : Antimicrobial Agents and Chemotherapy. e02245-18.

Research output: Contribution to journalArticle

7 Scopus citations

lptG contributes to changes in membrane permeability and the emergence of multidrug hypersusceptibility in a cystic fibrosis isolate of Pseudomonas aeruginosa

Harrison, L. B., Fowler, R. C., Abdalhamid, B., Selmecki, A. & Hanson, N. D., Nov 1 2019, In : MicrobiologyOpen. 8, 11, e844.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Streptococcus agalactiae Strains with Chromosomal Deletions Evade Detection with Molecular Methods

Tickler, I. A., Tenover, F. C., Dewell, S., Le, V. M., Blackman, R. N., Goering, R. V., Rogers, A. E., Piwonka, H., Jung-Hynes, B. D., Chen, D. J., Loeffelholz, M. J., Gnanashanmugam, D. & Baron, E. J., Apr 1 2019, In : Journal of clinical microbiology. 57, 4

Research output: Contribution to journalArticle

Updating molecular diagnostics for detecting methicillin- susceptible and methicillin-resistant staphylococcus aureus Isolates in Blood Culture Bottles

Tenover, F. C., Tickler, I. A., Le, V. M., Dewell, S., Mendes, R. E. & Goering, R. V., 2019, In : Journal of clinical microbiology. 57, 11, e01195-19.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2018

Adsorption and decontamination of α-synuclein from medically and environmentally-relevant surfaces

Phan, H. T. M., Bartz, J. C., Ayers, J., Giasson, B. I., Schubert, M., Rodenhausen, K. B., Kananizadeh, N., Li, Y. & Bartelt-Hunt, S. L., Jun 1 2018, In : Colloids and Surfaces B: Biointerfaces. 166, p. 98-107 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Assembly of a complete genome sequence for Gemmata obscuriglobus reveals a novel prokaryotic rRNA operon gene architecture

Franke, J. D., Blomberg, W. R., Todd, R. T., Thomas, R. W. & Selmecki, A., May 21 2018, (Accepted/In press) In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. p. 1-11 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Astrocyte EV-Induced lincRNA-Cox2 Regulates Microglial Phagocytosis: Implications for Morphine-Mediated Neurodegeneration

Hu, G., Liao, K., Niu, F., Yang, L., Dallon, B. W., Callen, S., Tian, C., Shu, J., Cui, J., Sun, Z., Lyubchenko, Y. L., Ka, M., Chen, X. M. & Buch, S., Dec 7 2018, In : Molecular Therapy - Nucleic Acids. 13, p. 450-463 14 p.

Research output: Contribution to journalArticle

13 Scopus citations

Attenuation of intestinal epithelial cell migration during cryptosporidium parvum infection involves parasite Cdg7-FLc-1030 RNA-Mediated induction and release of dickkopf-1

Ming, Z., Wang, Y., Gong, A. Y., Zhang, X. T., Li, M., Chen, T., Mathy, N. W., Strauss-Soukup, J. K. & Chen, X-M., Sep 8 2018, In : Journal of Infectious Diseases. 218, 8, p. 1336-1347 12 p.

Research output: Contribution to journalArticle

2 Scopus citations
2 Scopus citations

Creatinine downregulates TNF-α in macrophage and T cell lines

Riesberg, L. A., McDonald, T. L., Wang, Y., Chen, X-M., Holzmer, S. W., Tracy, S. M. & Drescher, K. M., Oct 1 2018, In : Cytokine. 110, p. 29-38 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Dehydration of prions on environmentally relevant surfaces protects them from inactivation by freezing and thawing

Yuan, Q., Telling, G., Bartelt-Hunt, S. L. & Bartz, J. C., Apr 1 2018, In : Journal of Virology. 92, 8, e02191-17.

Research output: Contribution to journalArticle

3 Scopus citations

Design, implementation, and interpretation of amplification studies for prion detection

Haley, N. J., Richt, J. A., Davenport, K. A., Henderson, D. M., Hoover, E. A., Manca, M., Caughey, B., Marthaler, D., Bartz, J. C. & Gilch, S., Mar 8 2018, (Accepted/In press) In : Prion. p. 1-10 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Flow Cytometry Analysis of Fungal Ploidy

Todd, R. T., Braverman, A. L. & Selmecki, A., Aug 1 2018, In : Current Protocols in Microbiology. 50, 1, e58.

Research output: Contribution to journalArticle

2 Scopus citations

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Mount, H. OC., Revie, N. M., Todd, R. T., Anstett, K., Collins, C., Costanzo, M., Boone, C., Robbins, N., Selmecki, A. & Cowen, L. E., Apr 1 2018, In : PLoS Genetics. 14, 4, e1007319.

Research output: Contribution to journalArticle

9 Scopus citations

IL10 restrains autoreactive B cells in transgenic mice expressing inactive RAG1

Palmer, V. L., Worth, A. N., Scott, R. L., Perry, G. A., Yan, M., Li, Q. Z. & Swanson, P., Sep 1 2018, In : Cellular Immunology. 331, p. 110-120 11 p.

Research output: Contribution to journalArticle

Independent amplification of co-infected long incubation period low conversion efficiency prion strains

Eckland, T. E., Shikiya, R. A. & Bartz, J. C., Oct 1 2018, In : PLoS Pathogens. 14, 10, p. e1007323

Research output: Contribution to journalArticle

3 Scopus citations

Nuclear delivery of parasite Cdg2_FLc_0220 RNA transcript to epithelial cells during Cryptosporidium parvum infection modulates host gene transcription

Zhao, G. H., Gong, A. Y., Wang, Y., Zhang, X. T., Li, M., Mathy, N. W. & Chen, X-M., Feb 15 2018, In : Veterinary Parasitology. 251, p. 27-33 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Proteomic profiling of HIV-infected T-cells by SWATH mass spectrometry

DeBoer, J., Wojtkiewicz, M. S., Haverland, N., Li, Y., Harwood, E., Leshen, E., George, J. W., Ciborowski, P. & Belshan, M. A., Mar 1 2018, In : Virology. 516, p. 246-257 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Range expansion and the origin of USA300 north american epidemic methicillin-resistant Staphylococcus aureus

Challagundla, L., Luo, X., Tickler, I. A., Didelot, X., Coleman, D. C., Shore, A. C., Coombs, G. W., Sordelli, D. O., Brown, E. L., Skov, R., Larsen, A. R., Reyes, J., Robledo, I. E., Vazquez, G. J., Rivera, R., Fey, P. D., Stevenson, K., Wang, S. H., Kreiswirth, B. N., Mediavilla, J. R. & 6 others, Arias, C. A., Planet, P. J., Nolan, R. L., Tenover, F. C., Goering, R. V. & Robinson, D. A., Jan 1 2018, In : mBio. 9, 1, e02016-17.

Research output: Contribution to journalArticle

12 Scopus citations

Salmonella enterica serovar Typhimurium has three transketolase enzymes contributing to the pentose phosphate pathway

Shaw, J. A., Henard, C. A., Liu, L., Dieckman, L. M., Vázquez-Torres, A. & Bourret, T. J., Jul 20 2018, In : Journal of Biological Chemistry. 293, 29, p. 11271-11282 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Spindle dynamics model explains chromosome loss rates in yeast polyploid cells

Jelenic, I., Selmecki, A., Laan, L. & Pavin, N., Aug 6 2018, In : Frontiers in Genetics. 9, AUG, 296.

Research output: Contribution to journalArticle

1 Scopus citations

Streptococcus agalactiae strains with chromosomal deletions evade detection with molecular methods

Tickler, I. A., Tenover, F. C., Dewell, S., Le, V. M., Blackman, R. N., Goering, R. V., Rogers, A. E., Piwonka, H., Jung-Hynes, B. D., Chen, D. J., Loeffelholz, M. J., Gnanashanmugam, D. & Baron, E. J., Apr 1 2018, In : Journal of clinical microbiology. 57, 4, e02040-18.

Research output: Contribution to journalArticle

The relapsing fever spirochete Borrelia turicatae persists in the highly oxidative environment of its soft-bodied tick vector

Bourret, T. J., Boyle, W. K., Zalud, A. K., Valenzuela, J. G., Oliveira, F. & Lopez, J. E., Jan 1 2018, (Accepted/In press) In : Cellular Microbiology. e12987.

Research output: Contribution to journalArticle

3 Scopus citations

Trans-suppression of defense DEFB1 gene in intestinal epithelial cells following Cryptosporidium parvum infection is associated with host delivery of parasite Cdg7_FLc_1000 RNA

Ming, Z., Gong, A. Y., Wang, Y., Zhang, X. T., Li, M., Dolata, C. E. & Chen, X-M., Jan 26 2018, (Accepted/In press) In : Parasitology Research. p. 1-10 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Trans-suppression of host CDH3 and LOXL4 genes during Cryptosporidium parvum infection involves nuclear delivery of parasite Cdg7_FLc_1000 RNA

Ming, Z., Gong, A. Y., Wang, Y., Zhang, X. T., Li, M., Li, Y., Pang, J., Dong, S., Strauss-Soukup, J. K. & Chen, X-M., Jan 1 2018, (Accepted/In press) In : International Journal for Parasitology.

Research output: Contribution to journalArticle

1 Scopus citations

VprBP (DCAF1) regulates RAG1 expression independently of dicer by mediating RAG1 degradation

Max Schabla, N., Perry, G. A., Palmer, V. L. & Swanson, P., Aug 1 2018, In : Journal of Immunology. 201, 3, p. 930-939 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches

Schürch, A. C., Arredondo-Alonso, S., Willems, R. J. L. & Goering, R. V., Jan 1 2018, (Accepted/In press) In : Clinical Microbiology and Infection.

Research output: Contribution to journalArticle

72 Scopus citations
2017

A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-κB to modulate inflammatory gene transcription in mouse macrophages

Ma, S., Ming, Z., Gong, A. Y., Wang, Y., Chen, X., Hu, G., Zhou, R., Shibata, A., Swanson, P. & Chen, X-M., Mar 1 2017, In : FASEB Journal. 31, 3, p. 1215-1225 11 p.

Research output: Contribution to journalArticle

28 Scopus citations

An enhanced emtricitabine-loaded long-acting nanoformulation for prevention or treatment of HIV infection

Mandal, S., Belshan, M. A., Holec, A., Zhou, Y. & Destache, C. J., Jan 1 2017, In : Antimicrobial Agents and Chemotherapy. 61, 1, e01475-16.

Research output: Contribution to journalArticle

19 Scopus citations

Complement regulatory protein factor H is a soluble prion receptor that potentiates peripheral prion pathogenesis

Kane, S. J., Farley, T. K., Gordon, E. O., Estep, J., Bender, H. R., Moreno, J. A., Bartz, J. C., Telling, G. C., Pickering, M. C. & Zabel, M. D., Dec 1 2017, In : Journal of Immunology. 199, 11, p. 3821-3827 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Continued expansion of USA300-like methicillin-resistant Staphylococcus aureus (MRSA) among hospitalized patients in the United States

Tickler, I. A., Goering, R. V., Mediavilla, J. R., Kreiswirth, B. N. & Tenover, F. C., Feb 1 2017, (Accepted/In press) In : Diagnostic Microbiology and Infectious Disease.

Research output: Contribution to journalArticle

9 Scopus citations