Cooperative binding of effectors by an allosteric ribozyme

Antony M. Jose, Garrett Soukup, Ronald R. Breaker

Research output: Contribution to journalArticle

70 Citations (Scopus)

Abstract

An allosteric ribozyme that requires two different effectors to induce catalysis was created using modular rational design. This ribozyme construct comprises five conjoined RNA modules that operate in concert as an obligate FMN- and theophylline-dependent molecular switch. When both effectors are present, this 'binary' RNA switch self-cleaves with a rate enhancement of ∼300-fold over the rate observed in the absence of effectors. Kinetic and structural studies implicate a switching mechanism wherein FMN binding induces formation of the active ribozyme conformation. However, the binding site for FMN is rendered inactive unless theophylline first binds to its corresponding site and reorganizes the RNA structure. This example of cooperative binding between allosteric effectors reveals a level of structural and functional complexity for RNA that is similar to that observed with allosteric proteins.

Original languageEnglish
Pages (from-to)1631-1637
Number of pages7
JournalNucleic Acids Research
Volume29
Issue number7
StatePublished - Apr 1 2001

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Catalytic RNA
Flavin Mononucleotide
RNA
Theophylline
Catalysis
Binding Sites
Proteins

All Science Journal Classification (ASJC) codes

  • Genetics

Cite this

Cooperative binding of effectors by an allosteric ribozyme. / Jose, Antony M.; Soukup, Garrett; Breaker, Ronald R.

In: Nucleic Acids Research, Vol. 29, No. 7, 01.04.2001, p. 1631-1637.

Research output: Contribution to journalArticle

Jose, AM, Soukup, G & Breaker, RR 2001, 'Cooperative binding of effectors by an allosteric ribozyme', Nucleic Acids Research, vol. 29, no. 7, pp. 1631-1637.
Jose, Antony M. ; Soukup, Garrett ; Breaker, Ronald R. / Cooperative binding of effectors by an allosteric ribozyme. In: Nucleic Acids Research. 2001 ; Vol. 29, No. 7. pp. 1631-1637.
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